PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006897-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 330aa    MW: 37109 Da    PI: 4.5112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006897-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-11167209754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      +++  +iL  +++Y+k+L
  WALNUT_00006897-RA 167 MAERRRRKRLNDRLSMLRSIVPKiS------RMDRTSILGDTIDYMKEL 209
                         79*********************66......9***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-9167209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-4167209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MELNEQCFLE ELLALRGDTS KIIPAQMNEV FSNGCSTFDY FNPAISFPEY SCCEGFSPQL  60
EQNLDTSYMT FNQVYCPFGN ELSAPQLTDS SLNTLPFPAQ EDYDPFAIME EKELGILGNE  120
IHNLELQASC KAEPIQSPEA QVFTTGECLQ GKNRAKKLQG HPSKNLMAER RRRKRLNDRL  180
SMLRSIVPKI SRMDRTSILG DTIDYMKELL GKINHLQLET EGNPNSTEIS KNVRPNEVLV  240
RNSPKFDVER RNVDTRIDIC CAGKPGLLLL TLSNLEALGL EIEECVISCF NDFTMQASCS  300
DQDMDQRAQQ SSEDIKQALF RNSGFGGGCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018333.11e-142Beta HLH protein 93
SwissprotQ9LSL12e-77BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A061FF701e-142A0A061FF70_THECC; Beta HLH protein 93
STRINGVIT_18s0001g08040.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-70beta HLH protein 93